The whole thread is an enjoyable read, and the answer seems to be - like many things in Western music theory - it was a design decision, a kind of legacy code, with pros and cons. "Things evolve to meet a need."
One of the answers talked about an all-fourths tuning, that some instruments use such tunings as standard.
https://en.wikipedia.org/wiki/All_fourths_tuning
Theoretically it's more beautiful, and simplifies the shapes and their movements across the fretboard. It might be a pain to overcome years of learning patterns on the guitar with the kink - I'll have to try it. Sometimes it's good to shake up the foundation and see what new patterns emerge.
Similarly, I love the logic (and I'd say even wisdom) of the piano keyboard - but there are some kinks in there too, which introduce complexity in the patterns and their transformations, making them harder to remember. I'm curious to try a hexagonal keyboard and other alternative layouts - I imagine the symmetry has practical advantages, and to my mind more aesthetically pleasing.
Wicki–Hayden note layout - https://en.wikipedia.org/wiki/Wicki%E2%80%93Hayden_note_layo...