I haven't seen a list of such measurements from permaculture, but I know it can be used to regreen deserts (as shown in Jordan, Saudi Arabia, Arizona and elsewhere). And I assume permaculture vastly increases water infiltration. Geoff Lawton has videos showing Zaytuna Farm happily surviving drought and flood alike.
If farmers switched from conventional agriculture to some combination of regenerative agriculture and permaculture, most flooding would be prevented. Their own fields would easily infiltrate rain, eliminating runoff that builds up into flooding.
The article mentions that in addition to Pakistan getting double the normal amount of rain, increased glacier melt is filling the Indus river. I assume that in the theoretical situation of all farmers in Pakistan practicing regenerative ag or permaculture, that land on the Indus would flood. But not 1/3 of the country as we're seeing now, and the flooded areas would recover faster.