The evidence suggests that its individualized instruction in a structured environment with clear expectations that is best -- of course you cannot scale this, but clever videos are no substitute.
The Khan Academy's audience tend to be good students-those who would thrive in any number of environments. Im not worried about these students.
Its the students who might have been great had they been exposed to a better environment that worry me. For this it takes good teachers and a system that attracts them to the field (which the current system does not).