I do something a bit special... Instead of naming my script foobarnator (and hence risking that another foobarnator may exist in the future and may clash with my script), I name my script foobarnatorToBeAliased.sh. Then in my list of aliases I alias foobarnator to foobarnatorToBeAliased.sh.
The alias itself looks a bit weird in that to pass arguments to an aliased command you need to use a function (in Bash at least AFACIT) but it all works fine.
As aliases aren't sourced when other scripts are running, I'm sure my scripts/commands ain't ever going to clash with anything.
I've been doing that since years.
It also works fine to add "wrappers" to existing commands: for example to add additional input sanitization catching common mistakes I'm making when calling some commands.