The advantage of physical systems is that it's straightforward to collect data from natural systems.
For a lot of physical systems it might be "straightforward" but expensive. Testing new building designs for energy efficiency is just a matter of building a new test building, why not just build 1000? Testing new car designs to see if they reach the safety qualifications is just a matter of crashing a few of your prototypes, why not crash 1000? It's just a matter of getting more telescope time. It's just a matter of getting more robots to try more materials or proteins. Yes you can do theoretically do it, it's just cost prohibitive to get Google-level datasets for many scientific and engineering problems. Of course that's not true for all domains (high-throughput sequencing for bioinformatics is the prime example of something that became cheaply data-rich for standard machine learning), but there are many domains where getting another data point is always possible but just would cost another million.
High throughput sequeuncing didn't solve any problems for bioinformatics- in fact, the problem is that we have so much data we don't know how to process it to extract the actual value from the data.
Bioinformaticists, with sufficiently accurate and detailed models of how genes translate to $BEHAVIOR_OR_OUTCOME, would need far fewer data to extract meaningful insights. So of course throughput hasn't solved the problem. That wasn't the point of the comment above.
Really, I was making a comment about https://en.wikipedia.org/wiki/The_Unreasonable_Effectiveness... which in my mind is still unresolved (that is: why do the math models we use for physical systems generalize so well, if we wouldn't expect them to do so?)
The disadvantage of physical systems is the data is usually expensive. In my old field I know someone who had to make a decision on a data set of 5 samples and each sample costed more than a million USD.
I've made models of physical systems that involve kind of life or death stuff with less than 30 samples.
It's not for the faint of heart and if someone doesn't know what they are doing, the system they are modelling, or how to share their results correctly... Yikes!
Are you sure you can conclude your system is safe?