The difference is that music is not, in fact, math. The representation is abstract to the utility. With software, the math is the utility.
Think of the guy who invented the equi-tempered scale. All throughout history you had to make instruments that are tuned to play in one scale. Now you can suddenly make instruments that can play all of them. Solves a real problem from music by making an improvement in the representation, so it can be viewed as all math. But is it really "just" math?