* Classic node_modules: Dependencies of dependencies that can't be satisfied by a shared hoisted version are nested as true copies (OSes may apply copy-on-write semantics on top of this, but from FS perspective, these are real files). Uses standard Node.js node_modules resolution [1].
* pnpm: ~1 real copy of each dependency version, and packages use symlinks in node_modules to point to their deps. Also uses standard resolution. Requires some compatibility work for packages that wrongly refer to transitive dependencies or to peer dependencies.
* pnp[2]: 1 real copy of each dependency version, but it's a zip file with Node.js and related ecosystem packages patched to read from zips and traverse dependency edges using a sort of import map. In addition to the compatibility work required from pnpm, this further requires compatibility work around the zip "filesystem" indirection.
In our real-world codebase, where we've done a modest but not exhaustive amount of package deduplication, pnpm confers around a 30% disk utilization savings, and pnp around a 80% savings.
Interestingly, the innovations on top of classic node_modules are so compelling that the package managers that originally implemented pnpm and pnp (pnpm and Yarn, respectively) have implemented each others' linking strategies as optional configs [3][4]. If MacOS had better FUSE ergonomics, I'd be counting down the days for another linking strategy based on that too.
[1] - https://nodejs.org/api/modules.html#loading-from-node_module... [2] - https://yarnpkg.com/features/pnp [3] - https://github.com/pnpm/pnpm/issues/2902 [4] - https://github.com/yarnpkg/berry/pull/3338