I worked for a company that made games that were used by young children and so covered by COPA. They definitely took a lot of care to delete everything.
In other words, you don't need to wipe backups but you can't use them without processes in place to ensure you comply with your customers' rights granted under the GDPR.
As a side note, the CNIL also clarified things the author have issues with, for instance "without undue delay" is set to 30 days. In the UK, I've read they backups for specific users must be deleted when technically possible. I'm not sure how that works in practice.
Put another way do you see any backup service/software advertising the ability to wipe data from backups to conform with GDPR DSAR requests? Its virtually impossible with existing tech services and legislators, law enforcement and the like are covering this up!