Ok, I didn't realize this aspect of the story, this is actually pretty cool, I agree.
I also like that the story encourages experimenting and testing out your mental models, like Liz did.
It's just the particular way they discover things that feels forced to me. The story is all about them coming to their own conclusions and thinking up their own experiments, but - it being a story - you know, it's actually all guided beforehand.
Maybe what irks me is that this concept of a character discovering "on their own" some ostensible deep truth (which is really just the author's personal opinion about something) has been used for a lot of worse reasons in other stories - even though, in this case, the "truth" is perfectly harmless and beneficial.
Anyway, it's always easier to criticize than to create, so I won't say I really have better ideas of how to do it.