In the long run, the NYTimes has so many options - and if they decide to do nothing other than continue a game people love, it's not like a couple million is an insane sum for them to "waste" on something that puts their brand in front of so many people every day.
1) It makes people aware that the NYTimes has lots of different word game options. 2) It makes people think of the NYTimes a lot. 3) They could put a link to a single story on the page. 4) They could offer an up-sell to a SuperWordle or something as part of their games package that might offer slightly different puzzles (sure, you can get Wordle clones all over the web, but a lot of people might not care about $3-4/mo for an NYTimes Games subscription). 5) Wordle could become premium in the future - or maybe just the Sunday edition is premium.
There are so many options. Some might be less user-friendly, but there are a lot of user-friendly options. When you buy something for cheap, you don't need to leverage it a lot to justify the purchase.
It is a pretty natural and obvious fit.
This is just speculation btw, I don't work for NYT or know the true reasons.