I guess it depends on the kind of proof we are entertaining. If the proof were so obvious that all observers immediately drew the same conclusion, (e.g., message in the sky, "Experiment #323481 is ending in X days."), then chaos might ensue. I don't see why an intelligent designer would intervene with the simulation without a very good reason. It's hard to imagine such a scenario, perhaps some kind of a test for transcendence, e.g., pass the test and get materialized in "outside" world.
If proof of simulation existed, I think it would be more abstruse, e.g., error states in quantum field theory. If this proof were only accessible to the intelligencia, I doubt the reaction would be very different from that of a new religion. Some would proclaim divine providence like the prophets of yore (perhaps it was a miracle, or perhaps they just saw Jesus in the toast). I doubt anything short of an exploitable error would cause a disturbance to life as we know it. On the other hand, if we could exploit it...