The earthquake in March suggest that it might be prudent to have data retention in other areas of the country.
While Tokyo is a big city and that comes with pluses for access, it has the following minuses:
1. real estate is expensive relative to the rest of Japan.
2. summer is hot - why have data centers in Tokyo and not up in the mountains or up north where it's cooler?
3. the Greater Tokyo area is due for a major earthquake. In addition, there's historical data dating back centuries showing that a big quake in one area is followed by big quakes in other areas of the country (although fingers crossed that we don't see a 9.0 quake).
There has been a lot of press over the past few months about companies in Japan putting effort into backup facilities that aren't in the Tokyo area. After the quake in March there were blackouts and a reasonable amount of chaos - just imagine what it would be like if the Tokyo quake actually occurs.