It was fascinating what was in the file - lots of misunderstandings and misinterpretations. For example, she was upset when the Challenger exploded, and this mystified the Stasi informers who had previously identified her as a pacifist (in their minds, the Shuttle was 100% military).
Similarly, she was trying to research what happened to a relative who had remained in Germany in the late 30s, and whether she had died of natural causes or been sent to the camps. The Stasi file was filled with speculations on the details of this "sleeper agent" with whom she was trying to establish contact.
All this to say that from the mindset of a spy, everything is spy-craft. Everyone's world-view shapes their interpretation of events and reality itself. Was the shuttle a military venture? Partly. Was it also a tool for science? Yup. But the functionaries who looked at her data in the heat of the cold war certainly couldn't see those distinctions.
For what it's worth, she was able to get her Stasi file, but has never been able to get a copy of her FBI file.