I like that they think of security, but this is the type of thing that forces people back to X11. Their own screenshot tool does not adhere to the same workflow, so maybe they are blind to the issue.
Considering that Gnome is now the default DE for the more popular distros, I doubt Flameshot will ever receive the honor of becoming the default screenshot tool, even though it should. It provides most of the capabilities that a user would need when taking a screenshot. Desktop Linux needs these little goodies, so it can be sold to the average user.