That way of thinking only makes sense if nothing ever changes. You even bring PHP as a good example here of how this fails fast. The world has changed greatly since 2003. The Python standard library carries three XML implementations and an outdated HTML parser irrelevant for the modern world. These libraries were state of the art when they were written, but it's the world around it that changed.
Now one can make the argument: why was it not modernized and updated? The simple answer is that people started building code against this and now depend on it working this way. The only way would be to completely rewrite them with new APIs, remove stuff no longer needed but then you're effectively back to just using crates.io and the likes. Except it's worse now because the standard library is a monolith and does not compose.