What we seem to have here is a failsafe, and the right decision. The key word there is "fail", because that's what it looks like. Some internal line of communication or process broken to the extent that somebody somewhere put out an order to ground planes. (or possibly a deliberate live readiness test) You want to fail safe, the cost of briefly inconveniencing aviation is incomparable to the cost of screwing up defenses in the case of a real attack. Failing like this also gets a lot of attention which will motivate people to fix whatever the issues were that lead to it.
I'd just think of it as a test case highlighting a bug. I don't know what great harm could come from it.