The claim here is that one would look at _ALL_ 1000+ year ld buildings, and then decide what to build.
You are building the strawman of looking at _ONE_ 1000+ year old building, and then building that because it must work. Nobody is arguing about this, and probably everybody here would agree that doing this is a bad idea.
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With that out of the way, there aren't many 1000+ year old buildings made out of wood. There are some, e.g., japanese temples, that IIRC have burned a couple of times along the way, but are 1000+ year old and build out of wood.
But most buildings in the 1000+ year old range are made out of stone and only partially out of wood (cathedrals, etc.).