I want to voice strong agreement with kevincox. I use an encrypted Matrix room daily and had no idea that reactions, relations (does that mean that edits are in cleartext??), etc are completely unencrypted. I've read a little bit of the spec (though clearly not very much), I've written a bot, I've patched the Element desktop client, I've even been working with a JSON export of my message history and didn't notice—perhaps I should have, but my point is that it's not obvious at all, and users SHOULD be proactively made aware of what's encrypted and what's not.
Sending things unencrypted that users have every reason to think are encrypted is extremely irresponsible. And I assumed, as I think is perfectly reasonable, that everything in an E2EE room is in fact end-to-end encrypted. I'm very disappointed to find out this way that it's not (and won't be for the foreseeable future), and I don't see any justification for failing to making users aware of that.
All that said, I love Matrix, will continue to use it every day, and am hugely rooting for the success of the project. Thanks for all your hard work on it!