They are not sure as there are various hypotheses apparently:
> He says vulture stomach acid is 10 to 100 times stronger than human stomach acid, "so it seems like the stomach itself is a very harsh environment."
> "Another hypothesis could be that they're actually using the bacteria in the stomach as some sort of probiotics," Hansen says. By having a gut full of a few tolerable species of bacteria, it's possible that those would crowd out other deadly microbes.
For instance, Corynebacterium Diphtheriae is not lethal per se, but then comes a virus that infects the bacteria, and kills the bacteria, and a byproduct of the virus causes the bacteria to cause diphteria. The phage (the bacteria virus) provides no advantage to C diphteriae.
My hypothesis for clostridiums, that includes C botulinum, is that they do want to kill their host, however. They kind of kill the planet they live in as they can thrive in the carcass while it lasts. So, deathly clostridiums have this at least short term advantage over non deathly ones.
C. tetani, perfrigens, botulinum and difficile can all kill you. However, C. perfrigens does it differently, by diggesting you before killing you, "on the fly" or "just in time"
Edit: what's -> lots
Paralysis enhances the chance of dying.
Being anaerobic limits their expansion.
Thanks to the Great Oxidation Event, cyanobacteria caused.
By the way, often humans and other multicellular Organisms are just battleground or collateral damage in billion year old wars between bacteria and/or viruses.
https://www.npr.org/templates/story/story.php?storyId=476655...
A defective gene resulted in No Big Deal to a very successful class of animals.