If your argument is that the NSA doesn't have your fingerprint because only the Global Entry Program has your fingerprint, I find that highly suspect. Of all the databases to be shared with the CIA and the NSA, Global Entry seems entirely reasonable that they be given access. Unlike state's driver license database where it's objectionable that the NSA be allowed to access it, Global Entry has to do with people coming in and out of the country and so seems entirely reasonable the NSA would have access, never mind the fine print no one reads when signing up for the program. I wouldn't be surprised if any of the three programs (Global Entry, TSA Pre, Clear) have it in their fine print that the CIA is legally given access to that database.