In this scenario, the binary is your ES3 or ES5 or what have you.
Compiling Go to an x86 ABI, Rust to the same x86 ABI, C to the same x86 ABI, etc. is an analogous problem to "shipping dozens of plaintext source code files over the wire that then might get executed in an environment you have no control over". It's harder, by order of magnitude and on every axis, than compiling TS, ES2015, whatever, all down to some lesser ES version. And yet these compilers are faster, more effective, and easier to use.
You've missed my point about static vs. dynamic linking entirely. The point is that C compilers did "bundling" for years while supporting dynamic linking, and now you're trying to say JavaScript is tackling some way more difficult problem when it has a much simpler language-to-"ABI" translation process and doesn't even need to support that?
As you say, this maybe isn't a fruitful discussion - but it's a true one. JS tooling developers got seriously deluded about the novelty of their problems and quality of solution at some point ca. 2014, and we will be dealing with the results for another decade or more. At the very least let's start being honest about it.