One copy tool that's not well known is RichCopy from Microsoft. It's a great copy util when dealing with huge amount of files. It supports parallel copy, resume from failed, and copy only changed files.
Rsync under Cygwin was always too slow. Any sort of significant I/O is slow under Cygwin.
I've learnt the hard way that you dont use rsync in cygwin for anything remotely crucial ;)