I think one of the main problems is that when you install git for windows, the default setting is to convert LF to CRLF when checking out code. This can cause a bunch of issues if you later try to work with those files within WSL (especially when doing any git-related stuff). I don't really understand why that's the default, or even why it's presented as an option during installation, it's been ages since I actually had issues reading/editing Unix-style files in Windows.

It's usually the other way around these days - most Windows apps can handle LF just fine, but Unix apps often cannot handle CR LF. So if you use Windows to generate a text file, things break when you try to use it from WSL.