I recently visited the pipe organ museum in Valley (Bavaria, Germany), where they did something similar: connect an organ console (which had been replaced with a newer one) to a PC to recreate the original sound of the organ (
http://www.lampl-orgelzentrum.com/St.Lorenz_Zentralspieltisc...) - however this was done using samples. While reading that, I wondered if it would be possible to get the same (or maybe an even better) result by emulating the pipes...