The computer can make a mess of organization simply because it's too easy to hide away everything and the system will oftentimes impose the method on you. Notes and documentation can help. Make a habit of daily self-talk, a "standup meeting for one" when you have a break. The exercise of speaking it aloud jogs the memory and creates a form of engagement that isn't had by thinking it or writing it. If done habitually you won't have to physically record much, because your priorities will remain stable day by day.