I tried installing two of those applications and I can't reproduce the error myself, but I can see the "Error loading the application. Contact your administrator." message within the strings of /Applications/SecurID.app/Contents/MacOS/SecurID, along with references to ".cire" and some strings from the .cire file ("certificate", "hash"). edit: I also see references to SecTrustCreateWithCertificates, SecTrustEvaluate, and other related functions from Security.framework which are designed to validate certificates (but wouldn't be called directly by applications as part of standard macOS code signing).
Conclusion: They probably rolled their own custom code signing system, albeit one that uses the system trust store to verify certificates.