Asking for a raise doesn't get you "flagged as a troublemaker" unless you're really an ass about it.
In my experience - good managers tend to get promoted quickly, while average/below average line managers tend to stagnate. In this environment, it's likely most line managers aren't the greatest managers and the ones interacting directly with ICs have a lot of skills to develop in the manager role.
The reality of most people is that they go to the job for a paycheck and put up with the (bad) management as a cost of that. In this environment, the most effective path towards higher pay is switching jobs, instead of risking navigating the inclinations of typically bad management.