The acceleration from a given force is inversely proportional to the mass of the body it is applied to.
The larger person has more mass and a larger cross sectional area. The question then is this:
Is Mf/Ms > Af/As,
where Mf and Ms are the masses of the fat and skinny persons, and Af and As are the cross sectional areas of the fat and skinny persons?
If Mf/Ms > Af/As then the fat person will feel less force from wind resistance at a given speed than will the skinny person.
Let's say my mass was 50% higher than my friend's mass. Unless my cross sectional area is also 50% higher than theirs, I'll experience less acceleration from wind resistance than they do at a given velocity.
If my increased mass came from just being bigger in all dimensions, I'd be 14% bigger in all dimensions, and have 31% more cross sectional area.
In reality, the increase in cross sectional area is even less than that. When you get fat you don't get taller. You get wider, but not as much as you get longer. Height and width are the ones that matter for cross sectional area assuming you aren't ridding side saddle.