IIRC, the default blinkenlighs on the CM-5 was apparently a LED for each of the 4096 "cores" (really a SIMD-lane), and whether or not that particular "core" is active. On means that SIMD-lane is active, off means its inactive. Kind of a glorified Microsoft Windows "CPU Performance" screen, except physical.
Given the regular pattern in Jurassic Park, I assume they reprogrammed the LEDs to look more futuristic.