The Science of the Squeezable, Poppable Vegan Egg Yolk
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I don't think anyone can answer this question. It's not completely clear whether all highly processed foods are bad or what makes them bad.
However, I suspect that most vegans (as opposed to vegetarians) are not primarily choosing this diet for health reasons, and many health experts still consider eggs to be bad because they are high in cholesterol, so this may not necessarily be a huge issue.
If you are picking the diet primarily due to environmental concern or animal welfare, then these vegan products have a similar profile to omnivore diets except with additional fiber.
"Processed food" is bad when it means "remove all the fiber and most of the protein and keep the carbs, saturated fats, sugar, and salt in proportions 10x higher than in while foods" -- the tasty unhealthy parts, and then don't even balance it on with a vegetable on the side. The problem with processed food is that it makes it easy to get a terrible balance of macros with too much of the wrong parts.
It's not bad to build whole foods from components.
Highly processed foods - in my book - exist primarily for taste and texture, not for nourishment, and my concern is the same about anything that burns money and time trying to replicate meat or eggs. I admire the Adrià brothers when they created liquid olives but pushing culinary boundaries for a select few is not the same as putting food in a supermarket for mass consumption.
As you say, it’s easy to get the wrong balance with processed foods - but I don’t see nutrition getting a higher priority than taste and texture!
The level of processing is up to you and your preferences, same thing for vegans.
You are paying the price elsewhere however due to environmental effects, antibiotic resistance, and zoonotic diseases (e.g. bird flu).