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Didn't you mean to say "where I _can't_ easily see and move things around"? or are you making a different point I'm not understanding, because it looks like you're negating yourself and I'm not sure what you mean.

Yes.

Moving sections around is doable in Microsoft Word too using Navigation Pane.

Highland 2 does this very nicely, and you can keep it all in .md

Link: https://highland2.app/screenwriters.php

Requires MacOS.

True.

One poor man's highland is putting together the requisite functions in VSCode or Atom. Neither currently has an add-on with the ability to move sections of .md, but if someone adds this, it would be a huge contribution to the writer community.