Why would any European airline fly over Belarus while the incident isn't resolved? No airline should fly over states which intercepts civil airliners in transit.
Practically I view the fly over ban as protecting passengers and property from being unduly seized by Belarus.
Since Belarus and Russia have close ties flying a plane into Russia at all seems about the same risk as flying that plane over and into Belarus.
Fair enough if you want to criticize Russia for being a kleptocracy that assassinates enemies on foreign soil, but diversion of flights to capture enemies of the state and then not treating them well in captivity is unfortunately not a hallmark of totalitarian regimes but a general feature of western statecraft as well, so let's not blow this tit-for-tat response out of proportion.