When I discovered NLP models like Word2Vec and Thought-Vectors, which assign vectors to words or even whole sentences/concepts, intuitively, it felt like that was exactly what was happening in my mind. It might be an illusion but I do not think in sentences or words, I only think in concepts and images that appear in my mind's eye in an instant. To form a larger idea, I build a chain of concepts. I am sure that eventually probes can pick up a clear distinct vector that uniquely summarizes the entire concept of what I was thinking or visualizing.
And as you suggested we could start off with a smaller subset of semaphores or concepts or visualizations that at first are the easiest signals to pick up via probes. After practice, these signals only get crisper.