Advice to huge numbers of people skews the odds of "this is probably fine", which I think is the root of this. Aside from the fact that quantifying just how many zeros are in front of that probability hasn't (can't?) be done. It probably _is_ reasonable to estimate based on prior science that if 300,000,000 people leave pizza out a few times a year, there's a one in a billion chance of warm cheese making someone super sick.
I also wonder how much lawsuit culture plays a part in this, it only takes one bad luck case.