I don't see why? Seems like all you need to do is take a photo of an evenly lit gray card, determine the variation of each pixel, and then apply the reverse of that to every photo you take.
And a simple filter can even get around the "evenly lit" part trivially, as long as it's smoothly lit. (I.e. handle gradients.)
The article doesn't mention this at all -- yet isn't this the kind of thing astronomy photographers do when stacking photos, to prevent the "fingerprint" from accumulating?
Of course, it's not even clear this "fingerprint" is even remotely readable from average photos -- it seems like it would be completely indistinguishable in any scene with detailed textures. So it's really only in areas of blank walls, sky, etc. where it poses a risk.