The development flow in migrate (the `migrate dev`) command is quite pedantic: it will check things like migrations missing from your migrations folder but already applied to the dev database, or migrations that were modified since they were applied (via a checksum) and guide you towards resolving the problem. That can happen because of merges, but even more commonly when you are just switching branches locally, or editing migrations.
We're also looking into ways to integrate with your CI and review process to provide more insight, for example when your branch gets stale and you need to "rebase" your migrations on the migrations from the main branch. It's something we are actively exploring, and we're more than happy to get your feedback and ideas on github/slack :)
My personal view is that _some level_ of consciousness of the migration process (schema and data) will always be required from developers on large enough projects. What we can do is build tools that help people getting their migrations right, but it can't be completely automated. There's a lot more to do, now that we have a stable, production ready foundation.