A Bayesian would understand this in terms of prior probabilities and likelihood ratios, but to put it into nontechnical terms, suppose that you tried out 15 different alterations and none of them seem to work. Then on the 16th, your detector goes off and says, "Less than 5% probability of these results arising by chance!" Do you conclude that it's 95% likely that this version is genuinely better? No, because the first 15 failed attempts told you that improving this webpage is actually pretty hard (the prior probability of an effective improvement is low), and now when you see that the 16th attempt has a result with a less than 5% probability of arising from chance, you figure "Eh, it's worth testing further, but probably it is just chance."
Another extremely important point is that the classical statistics you learned to use to decide that something was <5% likely to arise by chance, only apply if you decided in advance to do exactly that many trials and then stop. Your chance of finding, on some trial, that your running total of results is "statistically significant", when A and B are actually identically effective, is considerably greater than 5%. See http://lesswrong.com/lw/1gc/frequentist_statistics_are_frequ... - a trial I ran with 500 fair coinflips had at least one step where the cumulative data "rejected the null hypothesis with p < 0.05" 30% of the time.
You're not really to blame for this mistake, because the horrid non-Bayesian classical statistics taught in college are just about impossible to understand clearly; but it does sound to me like someone at your org needs to study (a) Bayes's Theorem (b) the case for reporting likelihood ratios rather than p-values (likelihood ratios are objective, p-values decidedly not) and (c) the beta distribution conjugate prior (which would make progress toward having priors and likelihood ratios over "These two pages have a single unknown conversion rate" or "These two pages have different unknown conversion rates"). Or in simpler terms, "Someone at your company needs to study Bayesian statistics, stat."