To some degree science relies on certain philosophical assumptions to be viable and philosophy aims to make those assumptions explicit and to allow one to understand the choices one has made in accepting them.
I agree that certain philosophical positions have been encroached upon by science but that is not a process that can continue indefinitely. The realm of enquiry that science can operate on is by neccesity smaller than that which philosophy can act upon.
Many people are going to respond to the above by saying "If your statements aren't empirical and/or falsifiable then they are meaningless - therefore philosophy outside of the natural sciences is meaningless".
If that's your response then congratulations. You've just done some philosophy. Now take a step back and examine the assumptions that brought you here.