Your characterization of the development of coordinate-free differential geometry is incorrect. Intrinsic geometry was not a seemingly "useless" generalization; it was motivated by concrete and specific problems about surfaces and mathematical physics. For example, one of Riemann's papers was literally titled "A mathematical work that seeks to answer the question posed by the most distinguished academy of Paris." (Perhaps not literally, given that's a translation, but you get the point.)

I don't know anything about ZX calculus, but if people are using it to solve real-world problems, that sounds good to me. What I object to is pure mathematicians giving "applications" of their work that aren't useful or real. And when the authors allude to applications in chemistry and biology, and no chemists or biologists are doing anything with category-theoretical analyses of Petri nets, I think it's reasonable to point this out.