I believe I know now: it's because of the convolution theorem. When performing a Fourier transform, we represent the signal in a new basis, where each component will independently get transformed by linear shift invariant systems.
Basically the Fourier basis diagonalizes the convolution operator. And the even deeper reason for that is that a complex exponential function can be shifted by simply multiplying it with a constant.
In simpler words, it comes down to the barber pole illusion. If you rotate a spring-shaped 3d curve, it looks as if it was traveling upwards. And the 2d projection of the spring are sines and cosines.
And it turns out that linear, shift-invariant systems are really common (or are at least a good approximation of many common natural phenomena), so it's very helpful to break up a signal into pieces that each get independently transformed, without any interaction effects.