It's not possible to totally eradicate a virus that has animal reservoirs. The virus apparently jumped from bats to humans once before so it will probably happen again. We can't vaccinate all the bats.
What if we can? How would we do that?
So, you don't really have to find every animal. Most should be enough.
[0]https://www.ted.com/talks/daniel_streicker_what_vaccinating_...