As someone else mentioned, this may be an intentional design to make it simpler to implement pulling down remote PRs from the destination repo.
What do you mean by multiple places for repo objects? Do you mean multiple remotes? The remotes are fully inside your local database if you run commands like git pull or git remote update, they are just not in your checkout. Commands like git show <commit hash> work on commit hashes in those remotes as well, even if it's not in one of your local branches.
Or do you mean configuring git to use multiple .git/objects directories? I haven't heard of that feature, can you give a link?
If you want the effect permanently, there’s the .git/objects/info/alternates file. For HTTP remotes, there’s apparently a .git/objects/info/http-alternates file as well (no idea how that works though). I’m assuming these files allow multiple alternates as the environment variable does.
https://docs.gitlab.com/ee/development/git_object_deduplicat...
I vaguely recall seeing @peff comment about this on HN years ago but I can't find that comment now. Here's a GitLab employee claiming GitHub uses alternates:
https://news.ycombinator.com/item?id=22179208
The thing is, that both the dmca repo and its forks must have alternates files to the same underlying common repo, otherwise the PR ref in the dmca repo wouldn't be able to see the merge commit pushed to the fork. Pushing the merge must have duplicated all the youtube-dl commits into the common repo used by both the dmca repo and its forks because youtube-dl and dmca would have different common repos.