On one hand, it's great that academia is finally starting to teach what people in the industry lament as a lack of engineering education in their new grads.

Then again, like what others have said here, you're probably better off doing the traditional CS education for now. As much as SE in school may teach you, having an industry job where you'll learn from system architects, QA teams and project managers is probably a better education anyway. Think of the CS material as more future proofing - if you ever decide to try to get a job at a place that values computer science (think Google), having CS will let you be on par with all the other candidates (seriously, I've seen some interviewers downgrade a candidate because they didn't have a CS background).