One thing is that air diffuses out fairly effectively even with the door closed, presumably through gaps in the door frame. Quick calculation (welcome any corrections, numbers pulled from quick online searches):
Resting breathing rate is ~6 liters/minute.
Sleep ~8 hours = ~500 minutes = 3000 liters exhaled.
CO2 exhaled is 5% concentration, so 150 liters of CO2
Room = 30 m^3 = 30000 liters
Expected additional CO2 concentration in morning in perfectly sealed room = 150 / 30000 = 0.5% = 5000ppm
Actual additional CO2 = 700ppm (1100 reading - baseline 400ppm)
I've also found that when all windows are closed, an air purifier seems to help (or a fan, lowest level is fine). Obviously it doesn't remove the CO2, but it seems to prevent buildup in the one corner where you are (bed, desk). I'm sceptical it's a problem but the data shows it is.