Key part with lots of sub clauses removed for readability: "Whoever, under color of any law, willfully subjects any person in any State to the deprivation of any rights, on account of such person being an alien, or by reason of his color, or race, shall be fined under this title or imprisoned not more than one year, or both;"
Let me quote it with line breaks for readability:
"Whoever, under color of any law, statute, ordinance, regulation, or custom, willfully subjects any person in any State, Territory, Commonwealth, Possession, or District to the deprivation of any rights, privileges, or immunities secured or protected by the Constitution or laws of the United States, "
So, anyone who dies this.
"or to different punishments, pains, or penalties, on account of such person being an alien, or by reason of his color, or race, than are prescribed for the punishment of citizens, "
Or who does this based on race, residency....
"shall be fined under this title or imprisoned not more than one year, or both"
Shall be punished.
You can invoke the law by doing the first set of things, or by doing the second set of things.
It is an OR clause, meaning if A OR B are true, then the penalties apply. IF there were an AND on race, it would be the way you read it.
If you do A OR B based on C
A: Deprivation of rights B: Different punishments
where C is on account of such person being an alien, or by reason of his color, or race
I removed B to make it more readable in my initial comment because you were only talking about A.