The reason that Jack Claw in this bundle was open sourced is because it is a prototype.
You can find sourcecode for games included in other versions linked from Wolfire's blog:
http://blog.wolfire.com/2010/06/Aquaria-goes-open-source http://crypticsea.blogspot.com/2010/05/gish-open-source.html http://blog.wolfire.com/2010/05/Lugaru-goes-open-source http://frictionalgames.blogspot.com/2010/05/penumbra-overtur...
As far as I know, the second Humble Bundle did not include any games of which was later open sourced.