In principle that is a good idea and nice digital version of analog pulse shaping. However, the pulses have a very distinctive shape (not visible in the blog post picture, but here in figure 7/9: https://www.mdpi.com/1424-8220/19/19/4264).
My programs use the trigger level just to select which waveform snippets are recorded. The peaks themselves are then identified by their steep slopes which shows up nicely in the derivatives: https://github.com/ozel/DIY_particle_detector/blob/90c180207...