Sometimes customers demand security audits as part of sales contracts. If it is a high enough value deal, the company may decide it is in their business best interest to say yes. In that scenario, not listening to the security auditor is not a viable option. You need to keep them onside to keep the customer onside.
Similarly, sometimes in order to sell products to government agencies you need to get security audits done. In that scenario, you have to listen to the security auditor and keep them onside, because if you don't keep them happy your ability to sell the product to the government is impeded.