Something happened just before the fuel pump battery hot-swap on the second stage. Here's some visualisation of the acceleration drop-off scraped from the web stream: https://twitter.com/DJSnM/status/1279583677890965504
It's a bit disappointing right because this hot-swap-and-then-ditch the battery maneuver is their key know-how, it helps to keep 2S engine simpler and cheaper.