> 1. HTTPS everywhere has zero impact on the usability of a website, but makes visiting those sites much more secure.
You have to install a plugin on every browser and device. That's not user friendly. Also some sites break and you have to understand why.
> 2. Apple's App Store model for installing applications improves security and is also easier to use for the average user.
You have to have an account on the app store. You can't log into the same account on more than five machines. You have to put your password in every time you install an app.
That's all a lot harder than clicking on a link in an email.
> 3. 1Password with Touch/Face ID can actually be easier these days than entering emails and passwords manually.
You have to install 1password on all your devices. You have to mange your passwords with 1password. I'm an expert and even I have a hard time getting it to catch every update and every password field. 1password is a usability nightmare. Having the same password everywhere is a lot easier (and obviously less secure).
You're looking at one aspect after the initial setup and ignoring maintenance.